STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF10185.1UPF0473 family protein. (127 aa)    
Predicted Functional Partners:
KNF09881.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.689
KNF09751.1
S-layer domain-containing protein.
  
     0.619
mreD
Rod shape-determining protein, subunit D.
  
     0.568
pepD
Cytosol non-specific dipeptidase PepD.
       0.560
KNF09188.1
Hypothetical protein.
  
     0.548
recX
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
       0.547
apeB
M18 family aminopeptidase 2.
       0.547
KNF09884.1
Hypothetical protein; Belongs to the UPF0297 family.
  
  
 0.490
KNF09768.1
S-layer domain-containing protein.
  
     0.472
mnmA2
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.457
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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