STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine import ATP-binding protein PotA. (263 aa)    
Predicted Functional Partners:
KNF09589.1
ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
     0.988
KNF09590.1
ABC-type uncharacterized transport system, periplasmic component.
 
     0.953
rbsC
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 0.864
KNF09271.1
ABC-type sugar transport system, periplasmic component.
  
 0.858
KNF07475.1
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
   
 0.739
KNF10027.1
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
   
 0.707
KNF09587.1
Hypothetical protein.
       0.551
KNF09591.1
HutP superfamily protein.
 
     0.533
KNF07749.1
ABC transporter ATP-binding protein.
 
     
0.490
KNF07865.1
Transcriptional regulator, LacI family.
  
 
 0.456
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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