STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIID1Stage II sporulation protein D. (475 aa)    
Predicted Functional Partners:
KNF10048.1
N-acetylmuramoyl-L-alanine amidase.
 
0.759
KNF08570.1
N-acetylmuramoyl-L-alanine amidase.
 
0.759
KNF09787.1
Peptidoglycan-binding LysM.
 
 
 0.752
KNF07834.1
N-acetylmuramoyl-L-alanine amidase.
 
0.751
KNF09293.1
N-acetylmuramoyl-L-alanine amidase.
 
0.751
KNF07853.1
Hypothetical protein.
  
 
 0.642
KNF09185.1
Hypothetical protein.
  
   0.583
yqfD
Sporulation protein YqfD.
  
  
 0.568
KNF07021.1
Peptidase M23B.
 
   
 0.564
cwlD
Germination-specific N-acetylmuramoyl-L-alanine amidase CwlD.
 
 
0.561
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.