STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase SpeA. (484 aa)    
Predicted Functional Partners:
speB
Agmatinase SpeB; Belongs to the arginase family.
 
  
 0.922
speE-2
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
 0.914
aguA
Agmatine deaminase AguA; Belongs to the agmatine deiminase family.
    
 0.817
speE
Polyamine aminopropyl transferase SpeE.
  
  
 
0.807
argH
Argininosuccinate lyase ArgH.
     
 0.596
lysA
Diaminopimelate decarboxylase LysA; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.579
KNF10097.1
ATPase, AAA family.
   
 
 0.482
KNF08150.1
MoxR-like ATPase.
   
 
 0.482
KNF09227.1
Radical SAM domain protein.
 
     0.453
corA
Magnesium transport protein CorA.
       0.446
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.