STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spmASpore maturation protein A. (192 aa)    
Predicted Functional Partners:
spmB
Spore maturation protein B.
  
 0.999
spoIIIAD
Stage III sporulation protein AD.
  
  
 0.630
yqfC
Sporulation protein YqfC.
  
   
 0.590
spoIIIAB
Stage III sporulation protein AB.
   
  
 0.551
spoIIM
Stage II sporulation protein M.
   
  
 0.536
spo0A
Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.500
spoVAB
Stage V sporulation protein AB.
      
 0.497
spoIIP
Stage II sporulation P.
      
 0.497
spoIIIAE
Stage III sporulation protein AE.
  
  
 0.431
spoIIIAA
Stage III sporulation protein AA.
  
  
 0.429
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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