STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsCRibose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (181 aa)    
Predicted Functional Partners:
KNF09271.1
ABC-type sugar transport system, periplasmic component.
 0.999
KNF09274.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; TC 3.A.1.2.-.
 0.995
rbsK
Ribokinase RbsK; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.944
rbsK-2
Ribokinase RbsK; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.894
livG1
High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG.
 
 0.864
potA
Spermidine/putrescine import ATP-binding protein PotA.
  
 0.864
KNF07865.1
Transcriptional regulator, LacI family.
 
 
 0.845
rbsR
Ribose operon repressor.
 
 
 0.844
KNF09488.1
Transcriptional regulator, LacI family.
 
 
 0.784
KNF09270.1
Protein of unknown function DUF45; Hypothetical protein DUF45.
       0.595
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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