STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF09064.1Putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (294 aa)    
Predicted Functional Partners:
dacF1
Serine-type D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
  
  
 
0.802
KNF09065.1
His kinase A.
 
  
 0.648
vanR-4
Regulatory protein VanR.
 
  
 0.609
dacF
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
  
  
 
0.526
KNF08078.1
Hypothetical protein.
  
 
 0.485
spoVD1
Stage V sporulation protein D.
 
 
 0.474
KNF07058.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.452
KNF08401.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.452
pbpA2
Penicillin-binding protein 1A.
   
 
 0.436
sps
Serine/threonine-protein kinase Sps.
     
 0.424
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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