STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF09089.1HTH-type transcriptional regulator, AraC family. (128 aa)    
Predicted Functional Partners:
atoS
Signal transduction histidine-protein kinase AtoS.
     
 0.821
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
     
 0.811
nifJ-2
Pyruvate-flavodoxin oxidoreductase NifJ.
     
 0.811
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.801
KNF07064.1
AraC family transcriptional regulator.
 
  
  0.783
KNF09090.1
Hypothetical protein.
       0.773
KNF08324.1
Transcriptional regulator, AraC family.
  
     0.738
KNF07120.1
AraC family transcriptional regulator.
 
  
  0.707
KNF09506.1
AraC-type DNA-binding domain-containing protein.
  
     0.600
KNF08507.1
AraC type HTH- domain containing protein.
  
     0.594
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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