Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KNF08902.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
KNF08903.1
High-affinity K+ transport system, ATPase chain B.
     0.991
KNF08904.1
Hypothetical protein.
     0.990
KNF08905.1
High-affinity K+ transport system, ATPase chain B.
     0.988
KNF08900.1
K+-transporting ATPase, A chain.
 
 
 0.983
kdpA
Potassium-transporting ATPase A chain KdpA.
 
 
 0.983
kdpD
Sensor protein KdpD.
 
  
 0.858
KNF08899.1
Hypothetical protein.
       0.446
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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