Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KNF08908.1Phage integrase family; Belongs to the 'phage' integrase family. (316 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
    
  0.760
nifJ-2
Pyruvate-flavodoxin oxidoreductase NifJ.
    
  0.760
KNF08129.1
Adenylate cyclase.
  
     0.642
KNF09966.1
Hypothetical protein.
  
     0.577
KNF09179.1
Glycosyltransferase.
  
   
 0.536
KNF07882.1
Putative anti-sigma F factor.
  
     0.509
ftsK
DNA translocase FtsK.
  
   
 0.500
KNF07478.1
Hypothetical protein.
  
     0.486
KNF08142.1
Hypothetical protein.
  
     0.443
KNF09919.1
Putative division protein, FtsQ-type; Essential cell division protein.
  
    0.438
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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