Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KNF07855.1 | csd-3 | CLPU_11c00230 | CLPU_6c01080 | Metal-dependent hydrolase. | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.768 |
csd-3 | KNF07855.1 | CLPU_6c01080 | CLPU_11c00230 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Metal-dependent hydrolase. | 0.768 |
csd-3 | iscU | CLPU_6c01080 | CLPU_6c01090 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Iron-sulfur cluster assembly scaffold protein IscU. | 0.997 |
csd-3 | iscU2 | CLPU_6c01080 | CLPU_1c00550 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Iron-sulfur cluster assembly scaffold protein IscU 2. | 0.933 |
csd-3 | nifJ | CLPU_6c01080 | CLPU_4c01980 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.711 |
csd-3 | nifJ-2 | CLPU_6c01080 | CLPU_5c01040 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.711 |
csd-3 | selD | CLPU_6c01080 | CLPU_3c02060 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Selenide, water dikinase SelD; Synthesizes selenophosphate from selenide and ATP. | 0.779 |
csd-3 | sufB | CLPU_6c01080 | CLPU_6c01060 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | FeS cluster assembly protein SufB. | 0.994 |
csd-3 | sufC | CLPU_6c01080 | CLPU_6c01050 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | FeS assembly ATPase SufC. | 0.995 |
csd-3 | sufD | CLPU_6c01080 | CLPU_6c01070 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | FeS assembly protein SufD. | 0.991 |
csd-3 | trxB | CLPU_6c01080 | CLPU_1c02980 | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Thioredoxin reductase TrxB. | 0.793 |
iscU | csd-3 | CLPU_6c01090 | CLPU_6c01080 | Iron-sulfur cluster assembly scaffold protein IscU. | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.997 |
iscU | nifJ | CLPU_6c01090 | CLPU_4c01980 | Iron-sulfur cluster assembly scaffold protein IscU. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.621 |
iscU | nifJ-2 | CLPU_6c01090 | CLPU_5c01040 | Iron-sulfur cluster assembly scaffold protein IscU. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.621 |
iscU | sufB | CLPU_6c01090 | CLPU_6c01060 | Iron-sulfur cluster assembly scaffold protein IscU. | FeS cluster assembly protein SufB. | 0.987 |
iscU | sufC | CLPU_6c01090 | CLPU_6c01050 | Iron-sulfur cluster assembly scaffold protein IscU. | FeS assembly ATPase SufC. | 0.983 |
iscU | sufD | CLPU_6c01090 | CLPU_6c01070 | Iron-sulfur cluster assembly scaffold protein IscU. | FeS assembly protein SufD. | 0.988 |
iscU | trxB | CLPU_6c01090 | CLPU_1c02980 | Iron-sulfur cluster assembly scaffold protein IscU. | Thioredoxin reductase TrxB. | 0.516 |
iscU2 | csd-3 | CLPU_1c00550 | CLPU_6c01080 | Iron-sulfur cluster assembly scaffold protein IscU 2. | Putative cysteine desulfurase Csd; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.933 |
iscU2 | nifJ | CLPU_1c00550 | CLPU_4c01980 | Iron-sulfur cluster assembly scaffold protein IscU 2. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.621 |
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