Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KNF08425.1DNA-directed RNA polymerase specialized sigma subunit. (136 aa)    
Predicted Functional Partners:
KNF08422.1
Hypothetical protein.
 
     0.922
KNF08423.1
Superfamily II DNA/RNA helicase, SNF2 family.
 
     0.911
KNF08426.1
Restriction endonuclease.
 
     0.845
KNF08420.1
Hypothetical protein.
 
     0.841
KNF08415.1
Hypothetical protein.
 
     0.813
KNF08424.1
Hypothetical protein.
       0.813
KNF08418.1
DNA polymerase I - 3'-5' exonuclease and polymerase domains.
 
     0.763
KNF08429.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.762
KNF08427.1
Phage terminase, small subunit.
 
     0.757
flgM
Negative regulator of flagellin synthesis, anti-sigma-28 factor FlgM.
  
 0.750
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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