Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KNF08427.1Phage terminase, small subunit. (183 aa)    
Predicted Functional Partners:
KNF08429.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.956
KNF08432.1
Hypothetical protein.
 
    0.923
KNF08431.1
Hypothetical protein.
 
     0.913
KNF08426.1
Restriction endonuclease.
 
    0.904
KNF08430.1
Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.878
KNF08439.1
Phage major capsid protein, HK97 family.
 
    0.847
KNF08422.1
Hypothetical protein.
 
     0.836
KNF08423.1
Superfamily II DNA/RNA helicase, SNF2 family.
 
     0.823
KNF08437.1
Phage portal protein, HK97 family.
 
    0.819
KNF08436.1
Phage terminase-like protein, large subunit.
 
     0.816
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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