STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF08459.1Hypothetical protein. (563 aa)    
Predicted Functional Partners:
KNF08155.1
YCII-like domain-containing protein.
  
     0.714
KNF08460.1
Hypothetical protein.
       0.610
KNF08458.1
Restriction endonuclease.
       0.607
KNF08457.1
Hypothetical protein.
       0.594
KNF09763.1
Hypothetical protein.
  
     0.568
rbr3
Rubrerythrin.
  
     0.547
rbr
Rubrerythrin.
  
     0.510
KNF07735.1
Putative carbohydrate uptake ABC transporter periplasmic-binding protein.
  
     0.471
KNF09840.1
Phage protein.
  
     0.423
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.