Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KNF07234.1 | hypA | CLPU_20c00100 | CLPU_7c01130 | Hydrogenase maturation factor. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.719 |
KNF07234.1 | hypB | CLPU_20c00100 | CLPU_7c01110 | Hydrogenase maturation factor. | Hydrogenase nickel incorporation protein HypB. | 0.705 |
KNF07234.1 | nifJ | CLPU_20c00100 | CLPU_4c01980 | Hydrogenase maturation factor. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.582 |
KNF07234.1 | nifJ-2 | CLPU_20c00100 | CLPU_5c01040 | Hydrogenase maturation factor. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.582 |
KNF07234.1 | rnfB | CLPU_20c00100 | CLPU_3c02450 | Hydrogenase maturation factor. | Electron transport complex protein, subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.515 |
KNF08482.1 | hypA | CLPU_7c01100 | CLPU_7c01130 | Hypothetical protein. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.874 |
KNF08482.1 | hypB | CLPU_7c01100 | CLPU_7c01110 | Hypothetical protein. | Hydrogenase nickel incorporation protein HypB. | 0.901 |
KNF08482.1 | sfrB | CLPU_7c01100 | CLPU_7c01120 | Hypothetical protein. | NADPH-Fe(3+) oxidoreductase subunit beta. | 0.922 |
KNF08688.1 | hypA | CLPU_6c01740 | CLPU_7c01130 | Hypothetical protein. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.730 |
flgD | hypA | CLPU_5c01240 | CLPU_7c01130 | Flagellar basal body rod modification protein FlgD. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.610 |
hypA | KNF07234.1 | CLPU_7c01130 | CLPU_20c00100 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Hydrogenase maturation factor. | 0.719 |
hypA | KNF08482.1 | CLPU_7c01130 | CLPU_7c01100 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Hypothetical protein. | 0.874 |
hypA | KNF08688.1 | CLPU_7c01130 | CLPU_6c01740 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Hypothetical protein. | 0.730 |
hypA | flgD | CLPU_7c01130 | CLPU_5c01240 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Flagellar basal body rod modification protein FlgD. | 0.610 |
hypA | hypB | CLPU_7c01130 | CLPU_7c01110 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Hydrogenase nickel incorporation protein HypB. | 0.973 |
hypA | mrp | CLPU_7c01130 | CLPU_6c01570 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Protein Mrp; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | 0.813 |
hypA | nifJ | CLPU_7c01130 | CLPU_4c01980 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.564 |
hypA | nifJ-2 | CLPU_7c01130 | CLPU_5c01040 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Pyruvate-flavodoxin oxidoreductase NifJ. | 0.564 |
hypA | rnfB | CLPU_7c01130 | CLPU_3c02450 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Electron transport complex protein, subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.542 |
hypA | sfrB | CLPU_7c01130 | CLPU_7c01120 | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | NADPH-Fe(3+) oxidoreductase subunit beta. | 0.928 |
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