KNF08284.1 protein (Gottschalkia purinilytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KNF08284.1

Putative ABC transporter periplasmic binding protein. (299 aa)

Predicted Functional Partners:

KNF08283.1

0.989

fhuC3

0.985

fhuG1

0.940

KNF08993.1

0.932

KNF08683.1

0.926

KNF07900.1

0.908

fhuC2

0.893

KNF08684.1

0.844

KNF08281.1

0.773

hemN-3

0.698

Your Current Organism:

Gottschalkia purinilytica

NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNF07900.1	KNF08283.1	CLPU_11c00690	CLPU_8c00480	Putative iron (III) dicitrate transport ATP-binding protein.	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.967
KNF07900.1	KNF08284.1	CLPU_11c00690	CLPU_8c00490	Putative iron (III) dicitrate transport ATP-binding protein.	Putative ABC transporter periplasmic binding protein.	0.908
KNF07900.1	KNF08683.1	CLPU_11c00690	CLPU_6c01690	Putative iron (III) dicitrate transport ATP-binding protein.	ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.972
KNF07900.1	KNF08993.1	CLPU_11c00690	CLPU_4c00390	Putative iron (III) dicitrate transport ATP-binding protein.	ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.965
KNF07900.1	fhuG1	CLPU_11c00690	CLPU_1c03040	Putative iron (III) dicitrate transport ATP-binding protein.	Iron compound ABC transporter, permease component FhuG; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.970
KNF08281.1	KNF08283.1	CLPU_8c00460	CLPU_8c00480	Flavodoxin family protein.	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.733
KNF08281.1	KNF08284.1	CLPU_8c00460	CLPU_8c00490	Flavodoxin family protein.	Putative ABC transporter periplasmic binding protein.	0.773
KNF08281.1	fhuC3	CLPU_8c00460	CLPU_8c00470	Flavodoxin family protein.	Ferrichrome ABC transporter ATP-binding protein FhuC.	0.697
KNF08281.1	hemN-3	CLPU_8c00460	CLPU_8c00450	Flavodoxin family protein.	Oxygen-independent coproporphyrinogen-III oxidase-like protein.	0.898
KNF08283.1	KNF07900.1	CLPU_8c00480	CLPU_11c00690	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative iron (III) dicitrate transport ATP-binding protein.	0.967
KNF08283.1	KNF08281.1	CLPU_8c00480	CLPU_8c00460	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Flavodoxin family protein.	0.733
KNF08283.1	KNF08284.1	CLPU_8c00480	CLPU_8c00490	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative ABC transporter periplasmic binding protein.	0.989
KNF08283.1	KNF08684.1	CLPU_8c00480	CLPU_6c01700	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component.	0.953
KNF08283.1	fhuC2	CLPU_8c00480	CLPU_4c00380	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Ferrichrome ABC transporter ATP-binding protein FhuC.	0.968
KNF08283.1	fhuC3	CLPU_8c00480	CLPU_8c00470	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Ferrichrome ABC transporter ATP-binding protein FhuC.	0.992
KNF08283.1	hemN-3	CLPU_8c00480	CLPU_8c00450	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Oxygen-independent coproporphyrinogen-III oxidase-like protein.	0.702
KNF08284.1	KNF07900.1	CLPU_8c00490	CLPU_11c00690	Putative ABC transporter periplasmic binding protein.	Putative iron (III) dicitrate transport ATP-binding protein.	0.908
KNF08284.1	KNF08281.1	CLPU_8c00490	CLPU_8c00460	Putative ABC transporter periplasmic binding protein.	Flavodoxin family protein.	0.773
KNF08284.1	KNF08283.1	CLPU_8c00490	CLPU_8c00480	Putative ABC transporter periplasmic binding protein.	Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.989
KNF08284.1	KNF08683.1	CLPU_8c00490	CLPU_6c01690	Putative ABC transporter periplasmic binding protein.	ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.926