STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF08285.1Acetamidase/formamidase family protein. (298 aa)    
Predicted Functional Partners:
ywdH
Putative aldehyde dehydrogenase YwdH; Belongs to the aldehyde dehydrogenase family.
   
 
  0.805
pcrA
ATP-dependent DNA helicase PcrA.
 
      0.782
KNF07032.1
Putative metal-dependent hydrolase.
  
  
  0.522
KNF07117.1
Threonine dehydrogenase/Zn-dependent dehydrogenase.
  
  
  0.480
gatA
glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
 
 0.477
KNF08286.1
Hypothetical protein.
       0.460
KNF08856.1
MgtC/SapB transporter.
   
    0.447
fhuC3
Ferrichrome ABC transporter ATP-binding protein FhuC.
       0.441
KNF08283.1
Putative iron (III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.441
KNF08284.1
Putative ABC transporter periplasmic binding protein.
       0.441
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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