STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF08292.1ABC-type Na+ efflux pump, permease component. (390 aa)    
Predicted Functional Partners:
KNF08291.1
ABC-type Na+ transport system, ATPase component.
 
 
 0.993
KNF07463.1
Putative abortive infection protein.
 
  0.689
KNF08293.1
Hypothetical protein.
       0.642
KNF08290.1
Protein of unknown function DUF3169; Hypothetical protein DUF3169.
       0.553
KNF08289.1
Putative transcriptional regulator.
       0.539
KNF07746.1
ABC-type multidrug transport system, ATPase component.
  
 
 0.536
KNF07372.1
Hypothetical protein.
  
     0.473
KNF08153.1
ABC-type multidrug transport system, ATPase component.
  
 
 0.432
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.