STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF08320.1ABC transporter ATP-binding protein. (288 aa)    
Predicted Functional Partners:
KNF08319.1
ABC-2 family transporter protein.
 
 0.972
KNF08322.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.874
KNF08321.1
Hypothetical protein.
       0.766
KNF08152.1
ABC-2 family transporter protein.
  
 0.626
KNF09391.1
ABC-2 family transporter protein.
   
 0.620
livF1
High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.
 
     
0.599
KNF07672.1
ABC transporter ATP-binding protein.
 
    
0.563
KNF07271.1
Putative ABC transporter ATP-binding protein.
 
  
 
0.549
KNF08402.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.537
KNF08323.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.505
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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