STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF08334.1HTH-type transcriptional regulator, GntR family. (450 aa)    
Predicted Functional Partners:
pheA
P-protein PheA.
    
 0.835
KNF10082.1
ACT domain-containing protein.
    
 0.835
ocd
Ornithine cyclodeaminase Ocd.
 
   
 0.640
KNF08335.1
Putative drug/metabolite transporter.
 
   
 0.632
KNF07693.1
Putative pyridoxal phosphate-dependent acyltransferase.
  
 
 0.440
KNF07790.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
    
   0.432
KNF08973.1
4Fe-4S ferredoxin, iron-sulfur binding domain protein.
    
   0.432
trpA
Tryptophan synthase alpha chain TrpA; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.430
trpB
Tryptophan synthase beta chain TrpB; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
 
 0.430
ywdH
Putative aldehyde dehydrogenase YwdH; Belongs to the aldehyde dehydrogenase family.
   
 
 0.415
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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