STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIO77646.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)    
Predicted Functional Partners:
KIO75677.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.720
KIO76504.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.717
KIO76738.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.700
KIO78678.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.689
KIO78586.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
KIO76283.1
Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.594
KIO78322.1
Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.569
KIO76196.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.485
KIO76460.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
Your Current Organism:
Pedobacter lusitanus
NCBI taxonomy Id: 1503925
Other names: CECT 9028, LMG 29220, LMG:29220, P. lusitanus, Pedobacter lusitanus Covas et al. 2017, Pedobacter sp. NL19, strain NL19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.