STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ57342.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (227 aa)    
Predicted Functional Partners:
SDZ65597.1
Predicted ATPase.
 
 0.987
SDZ57350.1
HAMP domain-containing protein.
  0.972
SDZ53936.1
HAMP domain-containing protein.
 
  0.954
SDY02631.1
Signal transduction histidine kinase.
 0.923
SDZ12440.1
Signal transduction histidine kinase.
 
  0.910
SDZ23002.1
Two-component system, sporulation sensor kinase A.
 
 0.905
SDZ51647.1
Signal transduction histidine kinase.
  0.900
SDZ51922.1
Heavy metal sensor kinase.
 
  0.880
SDZ54332.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
 0.880
SDY13239.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.877
Your Current Organism:
Bacillus caseinilyticus
NCBI taxonomy Id: 1503961
Other names: B. caseinilyticus, Bacillus caseinilyticus Reddy et al. 2015, Bacillus sp. SP, JCM 30246, MCC 2612, strain SP
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