SDZ68267.1 protein (Bacillus caseinilyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDZ68267.1

ABC-2 type transport system ATP-binding protein. (219 aa)

Predicted Functional Partners:

SDZ68273.1

0.907

SDZ68206.1

0.775

SDZ68263.1

0.773

SDZ65591.1

0.767

SDY16339.1

0.759

SDZ69194.1

0.755

SDZ09918.1

0.733

SDZ68270.1

0.639

SDZ68277.1

0.639

SDZ37986.1

0.597

Your Current Organism:

Bacillus caseinilyticus

NCBI taxonomy Id: 1503961
Other names: B. caseinilyticus, Bacillus caseinilyticus Reddy et al. 2015, Bacillus sp. SP, JCM 30246, MCC 2612, strain SP

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY16339.1	SDZ68267.1	SAMN05421736_101538	SAMN05421736_13319	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.759
SDZ09918.1	SDZ68267.1	SAMN05421736_10672	SAMN05421736_13319	ABC-2 family transporter protein.	ABC-2 type transport system ATP-binding protein.	0.733
SDZ37986.1	SDZ68267.1	SAMN05421736_11154	SAMN05421736_13319	Putative ABC transport system ATP-binding protein.	ABC-2 type transport system ATP-binding protein.	0.597
SDZ65591.1	SDZ68267.1	SAMN05421736_1261	SAMN05421736_13319	Putative ABC transport system ATP-binding protein.	ABC-2 type transport system ATP-binding protein.	0.767
SDZ68206.1	SDZ68267.1	SAMN05421736_13224	SAMN05421736_13319	Putative ABC transport system ATP-binding protein.	ABC-2 type transport system ATP-binding protein.	0.775
SDZ68263.1	SDZ68267.1	SAMN05421736_13318	SAMN05421736_13319	Protein of unknown function.	ABC-2 type transport system ATP-binding protein.	0.773
SDZ68263.1	SDZ68270.1	SAMN05421736_13318	SAMN05421736_13320	Protein of unknown function.	Hypothetical protein.	0.650
SDZ68263.1	SDZ68273.1	SAMN05421736_13318	SAMN05421736_13321	Protein of unknown function.	Hypothetical protein.	0.639
SDZ68263.1	SDZ68277.1	SAMN05421736_13318	SAMN05421736_13322	Protein of unknown function.	Hypothetical protein.	0.649
SDZ68267.1	SDY16339.1	SAMN05421736_13319	SAMN05421736_101538	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.759
SDZ68267.1	SDZ09918.1	SAMN05421736_13319	SAMN05421736_10672	ABC-2 type transport system ATP-binding protein.	ABC-2 family transporter protein.	0.733
SDZ68267.1	SDZ37986.1	SAMN05421736_13319	SAMN05421736_11154	ABC-2 type transport system ATP-binding protein.	Putative ABC transport system ATP-binding protein.	0.597
SDZ68267.1	SDZ65591.1	SAMN05421736_13319	SAMN05421736_1261	ABC-2 type transport system ATP-binding protein.	Putative ABC transport system ATP-binding protein.	0.767
SDZ68267.1	SDZ68206.1	SAMN05421736_13319	SAMN05421736_13224	ABC-2 type transport system ATP-binding protein.	Putative ABC transport system ATP-binding protein.	0.775
SDZ68267.1	SDZ68263.1	SAMN05421736_13319	SAMN05421736_13318	ABC-2 type transport system ATP-binding protein.	Protein of unknown function.	0.773
SDZ68267.1	SDZ68270.1	SAMN05421736_13319	SAMN05421736_13320	ABC-2 type transport system ATP-binding protein.	Hypothetical protein.	0.639
SDZ68267.1	SDZ68273.1	SAMN05421736_13319	SAMN05421736_13321	ABC-2 type transport system ATP-binding protein.	Hypothetical protein.	0.907
SDZ68267.1	SDZ68277.1	SAMN05421736_13319	SAMN05421736_13322	ABC-2 type transport system ATP-binding protein.	Hypothetical protein.	0.639
SDZ68267.1	SDZ69194.1	SAMN05421736_13319	SAMN05421736_1542	ABC-2 type transport system ATP-binding protein.	Putative ABC transport system ATP-binding protein/lipoprotein-releasing system ATP-binding protein.	0.755
SDZ68270.1	SDZ68263.1	SAMN05421736_13320	SAMN05421736_13318	Hypothetical protein.	Protein of unknown function.	0.650