STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CP523_11065Unannotated protein. (372 aa)    
Predicted Functional Partners:
CP523_11060
Unannotated protein.
 
  
 0.970
CP523_11055
Unannotated protein.
 
  
 0.954
CP523_11070
Unannotated protein.
 
     0.792
CP523_11075
Unannotated protein.
 
     0.731
CP523_07035
Unannotated protein.
  
     0.601
GCA_900092375_02301
Unannotated protein.
  
     0.556
CP523_12160
Unannotated protein.
  
     0.556
CP523_04200
Unannotated protein.
  
     0.547
CP523_06725
Unannotated protein.
  
     0.533
ytxC
Unannotated protein.
  
     0.530
Your Current Organism:
Clostridium septicum
NCBI taxonomy Id: 1504
Other names: ATCC 12464, BCRC 14552, Bacillus septicus, C. septicum, CCM 5743, CCRC 14552, CCRC:14552, CCUG 4855, CIP 61.10, CN 3790, DSM 7534, JCM 8144, NCCB 47070, NCIMB 547, NCTC 547, NRRL B-3197, Vibrio septicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.