STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CP523_06970Unannotated protein. (289 aa)    
Predicted Functional Partners:
gnpA
Unannotated protein.
 
     0.868
CP523_06950
Unannotated protein.
 
   
 0.809
CP523_06960
Unannotated protein.
 
   
 0.786
CP523_11715
Unannotated protein.
 
 
0.785
CP523_06965
Unannotated protein.
 
   
 0.775
CP523_03080
Unannotated protein.
 
 
 0.665
CP523_01205
Unannotated protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.592
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.567
CP523_09310
Unannotated protein.
 
 
 
0.534
CP523_02035
Unannotated protein.
  
 
 0.500
Your Current Organism:
Clostridium septicum
NCBI taxonomy Id: 1504
Other names: ATCC 12464, BCRC 14552, Bacillus septicus, C. septicum, CCM 5743, CCRC 14552, CCRC:14552, CCUG 4855, CIP 61.10, CN 3790, DSM 7534, JCM 8144, NCCB 47070, NCIMB 547, NCTC 547, NRRL B-3197, Vibrio septicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.