STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM42_01003-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (413 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.999
GM42_0115
ACP S-malonyltransferase.
 0.998
GM42_0110
3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. FabH family.
 
 
 0.997
GM42_1745
acetyl-CoA carboxylase biotin carboxylase subunit.
 
 
 0.955
GM42_3770
3-oxoacyl-ACP reductase.
 
 0.911
GM42_0550
Long-chain fatty acid--CoA ligase.
     
 0.824
lipB
Hypothetical protein; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
    
 0.811
GM42_2205
Branched-chain alpha-keto acid dehydrogenase subunit E2.
   
 
 0.810
GM42_1060
Dehydrogenase.
  
 0.796
GM42_1415
Short-chain dehydrogenase.
  
 0.796
Your Current Organism:
actinobacterium acMicro1
NCBI taxonomy Id: 1504316
Other names: a. acMicro-1, actinobacterium acMicro-1
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