Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GM43_0395 | GM43_0400 | GM43_0395 | GM43_0400 | CoA-disulfide reductase. | Hypothetical protein. | 0.760 |
GM43_0395 | GM43_0410 | GM43_0395 | GM43_0410 | CoA-disulfide reductase. | Hypothetical protein. | 0.577 |
GM43_0395 | GM43_2630 | GM43_0395 | GM43_2630 | CoA-disulfide reductase. | N-succinyldiaminopimelate aminotransferase. | 0.478 |
GM43_0395 | dapA | GM43_0395 | GM43_0440 | CoA-disulfide reductase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.474 |
GM43_0395 | dapB | GM43_0395 | GM43_0405 | CoA-disulfide reductase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.593 |
GM43_0400 | GM43_0395 | GM43_0400 | GM43_0395 | Hypothetical protein. | CoA-disulfide reductase. | 0.760 |
GM43_0400 | GM43_0410 | GM43_0400 | GM43_0410 | Hypothetical protein. | Hypothetical protein. | 0.644 |
GM43_0400 | dapB | GM43_0400 | GM43_0405 | Hypothetical protein. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.648 |
GM43_0410 | GM43_0395 | GM43_0410 | GM43_0395 | Hypothetical protein. | CoA-disulfide reductase. | 0.577 |
GM43_0410 | GM43_0400 | GM43_0410 | GM43_0400 | Hypothetical protein. | Hypothetical protein. | 0.644 |
GM43_0410 | dapB | GM43_0410 | GM43_0405 | Hypothetical protein. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.830 |
GM43_2610 | GM43_2630 | GM43_2610 | GM43_2630 | Succinyl-diaminopimelate desuccinylase. | N-succinyldiaminopimelate aminotransferase. | 0.966 |
GM43_2610 | dapA | GM43_2610 | GM43_0440 | Succinyl-diaminopimelate desuccinylase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.789 |
GM43_2610 | dapB | GM43_2610 | GM43_0405 | Succinyl-diaminopimelate desuccinylase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.824 |
GM43_2610 | dapD | GM43_2610 | GM43_2615 | Succinyl-diaminopimelate desuccinylase. | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | 0.934 |
GM43_2610 | lysA | GM43_2610 | GM43_0195 | Succinyl-diaminopimelate desuccinylase. | Hypothetical protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.906 |
GM43_2630 | GM43_0395 | GM43_2630 | GM43_0395 | N-succinyldiaminopimelate aminotransferase. | CoA-disulfide reductase. | 0.478 |
GM43_2630 | GM43_2610 | GM43_2630 | GM43_2610 | N-succinyldiaminopimelate aminotransferase. | Succinyl-diaminopimelate desuccinylase. | 0.966 |
GM43_2630 | dapA | GM43_2630 | GM43_0440 | N-succinyldiaminopimelate aminotransferase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.738 |
GM43_2630 | dapB | GM43_2630 | GM43_0405 | N-succinyldiaminopimelate aminotransferase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.878 |
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