GQ55_9G125700 protein (Panicum hallii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GQ55_9G125700

Uncharacterized protein. (527 aa)

Predicted Functional Partners:

GQ55_5G017200

0.730

GQ55_5G017300

0.730

GQ55_9G454300

0.708

GQ55_7G334400

0.691

GQ55_5G113200

0.691

GQ55_5G113100

0.691

GQ55_5G121000

0.691

GQ55_7G331000

0.682

GQ55_1G379800

0.682

GQ55_6G089500

0.677

Your Current Organism:

Panicum hallii

NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GQ55_1G379800	GQ55_5G017200	A0A2T7FBR9	A0A2T7DBK1	DHO_dh domain-containing protein.	OMPdecase domain-containing protein.	0.992
GQ55_1G379800	GQ55_5G017300	A0A2T7FBR9	A0A2T7DBK3	DHO_dh domain-containing protein.	OMPdecase domain-containing protein.	0.992
GQ55_1G379800	GQ55_5G113100	A0A2T7FBR9	A0A2T7DF72	DHO_dh domain-containing protein.	Amidohydro_3 domain-containing protein.	0.991
GQ55_1G379800	GQ55_5G113200	A0A2T7FBR9	A0A2T7DF66	DHO_dh domain-containing protein.	Amidohydro-rel domain-containing protein.	0.990
GQ55_1G379800	GQ55_5G121000	A0A2T7FBR9	A0A2T7DFG8	DHO_dh domain-containing protein.	Amidohydro-rel domain-containing protein.	0.991
GQ55_1G379800	GQ55_6G089500	A0A2T7FBR9	A0A2T7D5F3	DHO_dh domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.978
GQ55_1G379800	GQ55_7G331000	A0A2T7FBR9	A0A2T7D1L4	DHO_dh domain-containing protein.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.510
GQ55_1G379800	GQ55_7G334400	A0A2T7FBR9	A0A2T7D1S8	DHO_dh domain-containing protein.	Amidohydro-rel domain-containing protein.	0.980
GQ55_1G379800	GQ55_9G125700	A0A2T7FBR9	A0A2T7C2E6	DHO_dh domain-containing protein.	Uncharacterized protein.	0.682
GQ55_5G017200	GQ55_1G379800	A0A2T7DBK1	A0A2T7FBR9	OMPdecase domain-containing protein.	DHO_dh domain-containing protein.	0.992
GQ55_5G017200	GQ55_5G017300	A0A2T7DBK1	A0A2T7DBK3	OMPdecase domain-containing protein.	OMPdecase domain-containing protein.	0.902
GQ55_5G017200	GQ55_5G113100	A0A2T7DBK1	A0A2T7DF72	OMPdecase domain-containing protein.	Amidohydro_3 domain-containing protein.	0.943
GQ55_5G017200	GQ55_5G113200	A0A2T7DBK1	A0A2T7DF66	OMPdecase domain-containing protein.	Amidohydro-rel domain-containing protein.	0.943
GQ55_5G017200	GQ55_5G121000	A0A2T7DBK1	A0A2T7DFG8	OMPdecase domain-containing protein.	Amidohydro-rel domain-containing protein.	0.943
GQ55_5G017200	GQ55_6G089500	A0A2T7DBK1	A0A2T7D5F3	OMPdecase domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.934
GQ55_5G017200	GQ55_7G331000	A0A2T7DBK1	A0A2T7D1L4	OMPdecase domain-containing protein.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.993
GQ55_5G017200	GQ55_7G334400	A0A2T7DBK1	A0A2T7D1S8	OMPdecase domain-containing protein.	Amidohydro-rel domain-containing protein.	0.943
GQ55_5G017200	GQ55_9G125700	A0A2T7DBK1	A0A2T7C2E6	OMPdecase domain-containing protein.	Uncharacterized protein.	0.730
GQ55_5G017300	GQ55_1G379800	A0A2T7DBK3	A0A2T7FBR9	OMPdecase domain-containing protein.	DHO_dh domain-containing protein.	0.992
GQ55_5G017300	GQ55_5G017200	A0A2T7DBK3	A0A2T7DBK1	OMPdecase domain-containing protein.	OMPdecase domain-containing protein.	0.902