STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GQ55_7G206400General transcription factor IIH subunit. (431 aa)    
Predicted Functional Partners:
GQ55_9G092800
Uncharacterized protein; Belongs to the cyclin family.
   
 0.999
GQ55_9G170900
Uncharacterized protein.
    
  0.999
GQ55_4G029100
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.999
GQ55_3G109900
Helicase ATP-binding domain-containing protein.
    
 0.999
GQ55_3G283000
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.999
GQ55_3G361700
Uncharacterized protein.
    
 0.999
GQ55_2G062900
RNA_pol_L_2 domain-containing protein.
    
 0.999
GQ55_2G140600
RPOLD domain-containing protein.
   
 0.999
GQ55_1G011500
RPOL4c domain-containing protein.
    
 0.999
GQ55_1G021300
Uncharacterized protein.
   
 0.999
Your Current Organism:
Panicum hallii
NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii
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