STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GQ55_7G304800Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (276 aa)    
Predicted Functional Partners:
GQ55_4G363100
Uncharacterized protein.
     
 0.655
GQ55_5G150300
Uncharacterized protein.
     
 0.527
GQ55_9G436700
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.507
GQ55_8G031500
ATG13 domain-containing protein.
   
 0.429
GQ55_7G228000
ATG13 domain-containing protein.
   
 0.429
GQ55_1G319000
ATG13 domain-containing protein.
   
 0.429
GQ55_6G186000
Fe2OG dioxygenase domain-containing protein.
  
     0.402
Your Current Organism:
Panicum hallii
NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.