gene:199032866 protein (Polaromonas sp. CG912)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

gene:199032866

TRAP-type C4-dicarboxylate transport system, large permease component. (432 aa)

Predicted Functional Partners:

CDS53628.1

0.997

CDS53626.1

0.992

CDS54495.1

0.921

gene:199034111

0.868

gene:199034563

0.868

gene:199032025

0.867

gene:199033781

0.860

CDS52810.1

0.857

gene:199032031

0.830

CDS55410.1

0.781

Your Current Organism:

Polaromonas sp. CG912

NCBI taxonomy Id: 1504672
Other names: P. sp. CG9_12, Polaromonas sp. CG9_12

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDS52810.1	CDS53628.1	gene:199032044	gene:199032867	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	0.698
CDS52810.1	CDS54495.1	gene:199032044	gene:199033750	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.	0.918
CDS52810.1	gene:199032866	gene:199032044	gene:199032866	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP-type C4-dicarboxylate transport system, large permease component.	0.857
CDS53626.1	CDS53628.1	gene:199032865	gene:199032867	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	0.993
CDS53626.1	CDS54495.1	gene:199032865	gene:199033750	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.	0.789
CDS53626.1	CDS55410.1	gene:199032865	gene:199034678	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP-type C4-dicarboxylate transport system, periplasmic component.	0.745
CDS53626.1	gene:199032866	gene:199032865	gene:199032866	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	TRAP-type C4-dicarboxylate transport system, large permease component.	0.992
CDS53628.1	CDS52810.1	gene:199032867	gene:199032044	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	0.698
CDS53628.1	CDS53626.1	gene:199032867	gene:199032865	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	0.993
CDS53628.1	CDS54495.1	gene:199032867	gene:199033750	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.	0.689
CDS53628.1	CDS55410.1	gene:199032867	gene:199034678	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type C4-dicarboxylate transport system, periplasmic component.	0.784
CDS53628.1	gene:199032025	gene:199032867	gene:199032025	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	0.740
CDS53628.1	gene:199032031	gene:199032867	gene:199032031	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type C4-dicarboxylate transport system, periplasmic component.	0.591
CDS53628.1	gene:199032866	gene:199032867	gene:199032866	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type C4-dicarboxylate transport system, large permease component.	0.997
CDS53628.1	gene:199033781	gene:199032867	gene:199033781	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type C4-dicarboxylate transport system, periplasmic component.	0.579
CDS53628.1	gene:199034111	gene:199032867	gene:199034111	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	0.775
CDS53628.1	gene:199034563	gene:199032867	gene:199034563	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	TRAP-type C4-dicarboxylate transport system, periplasmic component.	0.715
CDS54495.1	CDS52810.1	gene:199033750	gene:199032044	TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	0.918
CDS54495.1	CDS53626.1	gene:199033750	gene:199032865	TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein.	0.789
CDS54495.1	CDS53628.1	gene:199033750	gene:199032867	TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5.	TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.	0.689