STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJY50176.1KEGG: phaC; poly(R)-hydroxyalkanoic acid synthase; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold containing protein. (635 aa)    
Predicted Functional Partners:
AJY51758.1
KEGG: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; TIGRFAM: acetoacetyl-CoA reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 
 0.964
AJY52321.1
KEGG: phbB; acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; TIGRFAM: acetoacetyl-CoA reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 
 0.964
AJY50917.1
KEGG: poly-beta-hydroxybutyrate polymerase domain-containing protein; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold containing protein; Poly-beta-hydroxybutyrate polymerase domain-containing protein.
  
  
 
0.913
AJY50254.1
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
     
 0.911
AJY50175.1
Phasin family protein; KEGG: phaP; hypothetical protein; TIGRFAM: phasin family protein; PFAM: Phasin.
 
   
 0.867
AJY50147.1
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: phaR; polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.783
AJY51803.1
Patatin; KEGG: phospholipase, patatin-like family protein; PFAM: Patatin.
 
   
 0.611
AJY51657.1
Hypothetical protein; KEGG: alpha/beta hydrolase.
  
  
 0.566
AJY50174.1
KEGG: hypothetical protein.
 
     0.517
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.513
Your Current Organism:
Halomonas sp. KO116
NCBI taxonomy Id: 1504981
Other names: H. sp. KO116
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