STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H477_3424Unannotated protein. (361 aa)    
Predicted Functional Partners:
H477_3985
Unannotated protein.
    
 0.761
H477_5166
Unannotated protein.
 
 
 0.710
H477_0427
Unannotated protein.
  
  
 0.701
H477_0504
Unannotated protein.
 
  
 0.681
H477_4974
Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.679
H477_3450
Unannotated protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.673
H477_5163
Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Belongs to the MnmG family.
 
 
 0.669
ribF
Unannotated protein; Belongs to the ribF family.
 
    0.661
H477_1027
Unannotated protein.
  
  
 0.632
tilS
Unannotated protein.
 
 
 
 0.632
Your Current Organism:
Paeniclostridium sordellii
NCBI taxonomy Id: 1505
Other names: ATCC 9714, BCRC 10649, Bacillus oedematis sporogenes, Bacillus sordelli, CCRC 10649, CCRC:10649, CCUG 9284, CIP 103658, Clostridium sordellii, DSM 2141, JCM 3814, LMG 15708, LMG:15708, NCIMB 10717, NCMB:10717, P. sordellii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.