STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H477_2010Unannotated protein. (188 aa)    
Predicted Functional Partners:
H477_2006
Unannotated protein.
  
    0.747
H477_2009
Unannotated protein.
  
    0.740
H477_3738
Unannotated protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 
 0.681
rpsJ
Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.639
H477_4786
Unannotated protein.
  
 
 0.620
H477_5880
Unannotated protein.
     
 0.611
H477_1149
Unannotated protein.
  
 
 0.610
rplN
Unannotated protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.596
H477_2042
Unannotated protein; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.552
rplE
Unannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
  
 
 0.541
Your Current Organism:
Paeniclostridium sordellii
NCBI taxonomy Id: 1505
Other names: ATCC 9714, BCRC 10649, Bacillus oedematis sporogenes, Bacillus sordelli, CCRC 10649, CCRC:10649, CCUG 9284, CIP 103658, Clostridium sordellii, DSM 2141, JCM 3814, LMG 15708, LMG:15708, NCIMB 10717, NCMB:10717, P. sordellii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.