STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msrAUnannotated protein; Belongs to the MsrA Met sulfoxide reductase family. (317 aa)    
Predicted Functional Partners:
H477_3635
Unannotated protein.
  
 0.986
H477_3690
Unannotated protein.
  
 0.986
H477_3123
Unannotated protein.
  
  
 0.943
H477_5222
Unannotated protein.
  
 0.916
GCA_001950115_00046
Unannotated protein.
  
 
 0.899
rplT
Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.838
H477_4394
Unannotated protein; Belongs to the glutathione peroxidase family.
  
 
 0.829
H477_5809
Unannotated protein; Belongs to the BI1 family.
  
   0.808
clpX
Unannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 
 0.802
sodA
Unannotated protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.799
Your Current Organism:
Paeniclostridium sordellii
NCBI taxonomy Id: 1505
Other names: ATCC 9714, BCRC 10649, Bacillus oedematis sporogenes, Bacillus sordelli, CCRC 10649, CCRC:10649, CCUG 9284, CIP 103658, Clostridium sordellii, DSM 2141, JCM 3814, LMG 15708, LMG:15708, NCIMB 10717, NCMB:10717, P. sordellii
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