STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYJ54_09005GDSL family lipase. (239 aa)    
Predicted Functional Partners:
AYJ54_31400
Uncharacterized protein.
 
     0.705
AYJ54_22955
Uncharacterized protein.
 
     0.682
AYJ54_01670
Tripartite tricarboxylate transporter TctB.
  
     0.675
AYJ54_22910
Uncharacterized protein.
 
     0.665
AYJ54_18780
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
   
 0.662
AYJ54_25990
Pectate_lyase_3 domain-containing protein.
   
 0.662
AYJ54_44780
Exo-poly-alpha-D-galacturonosidase.
   
 0.662
AYJ54_32090
Uncharacterized protein.
 
     0.658
AYJ54_01995
Uncharacterized protein.
 
     0.651
AYJ54_29440
Tricarboxylate transporter.
  
     0.645
Your Current Organism:
Bradyrhizobium centrolobii
NCBI taxonomy Id: 1505087
Other names: B. centrolobii, Bradyrhizobium sp. BR 10245, Bradyrhizobium sp. BR 10290, Bradyrhizobium sp. BR 10351, HAMBI:3597, strain BR 10245
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.