STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYJ54_12565PKHD-type hydroxylase AYJ54_12565. (229 aa)    
Predicted Functional Partners:
AYJ54_12575
TonB-dependent receptor.
 
  
 0.968
AYJ54_12570
TonB-dependent receptor.
 
    0.954
AYJ54_12550
Energy transducer TonB.
 
    0.867
AYJ54_12555
Biopolymer transporter.
  
    0.851
AYJ54_10080
Ligand-gated channel protein.
 
  
 0.846
AYJ54_05535
Energy transducer TonB.
 
  
 0.842
AYJ54_12560
Biopolymer transport protein ExbB.
  
  
 0.836
AYJ54_45110
Uncharacterized protein.
  
  
 0.791
AYJ54_37950
CopG family transcriptional regulator.
   
 
  0.533
AYJ54_06505
CopG family transcriptional regulator.
   
 
  0.512
Your Current Organism:
Bradyrhizobium centrolobii
NCBI taxonomy Id: 1505087
Other names: B. centrolobii, Bradyrhizobium sp. BR 10245, Bradyrhizobium sp. BR 10290, Bradyrhizobium sp. BR 10351, HAMBI:3597, strain BR 10245
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.