STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYJ54_19775annotation not available (307 aa)    
Predicted Functional Partners:
AYJ54_19780
annotation not available
       0.799
AYJ54_06180
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.696
AYJ54_03560
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.659
AYJ54_06570
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
AYJ54_12115
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.582
AYJ54_26415
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.565
AYJ54_09185
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.533
AYJ54_36780
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.507
AYJ54_19785
annotation not available
  
    0.464
atpF
ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.459
Your Current Organism:
Bradyrhizobium centrolobii
NCBI taxonomy Id: 1505087
Other names: B. centrolobii, Bradyrhizobium sp. BR 10245, Bradyrhizobium sp. BR 10290, Bradyrhizobium sp. BR 10351, HAMBI:3597, strain BR 10245
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.