STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYJ54_23780Thiamine biosynthesis protein. (321 aa)    
Predicted Functional Partners:
AYJ54_23775
ABC transporter permease.
 
 
  0.943
AYJ54_23765
ABC transporter permease.
 
 
  0.940
AYJ54_23770
Nitrate ABC transporter ATP-binding protein.
 
 
 0.919
AYJ54_23755
5-carboxymethyl-2-hydroxymuconate isomerase.
       0.799
AYJ54_23760
Polysaccharide deacetylase.
       0.799
AYJ54_31200
ABC transporter permease.
 
 
  0.720
AYJ54_03310
C4-dicarboxylate ABC transporter permease.
  
     0.715
AYJ54_28210
ABC transporter permease.
 
 
  0.715
AYJ54_28215
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein.
 
 
 0.708
ssuB
Aliphatic sulfonates import ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 
 0.667
Your Current Organism:
Bradyrhizobium centrolobii
NCBI taxonomy Id: 1505087
Other names: B. centrolobii, Bradyrhizobium sp. BR 10245, Bradyrhizobium sp. BR 10290, Bradyrhizobium sp. BR 10351, HAMBI:3597, strain BR 10245
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