STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD34091.1Alpha-mannosidase. (871 aa)    
Predicted Functional Partners:
SFD34070.1
Lichenan operon transcriptional antiterminator.
 
    0.919
SFD34133.1
PTS system IIC component, Fru family (TC 4.A.2).
    0.858
SFD34106.1
Mannosylglycerate hydrolase.
 
    
0.835
SFD34048.1
Fructokinase.
  
  
 0.721
SFD46758.1
Helix-turn-helix domain-containing protein.
 
    0.719
SFD34173.1
PTS system IIA component, Fru family.
 
    0.694
SFD34154.1
PTS system IIB component, Fru family.
 
    0.680
SFD38556.1
AraC-type DNA-binding protein.
 
     0.616
SFD38576.1
Predicted arabinose efflux permease, MFS family.
  
     0.522
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.501
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.