STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD34963.1DNA-binding transcriptional regulator, XRE-family HTH domain. (361 aa)    
Predicted Functional Partners:
SFD34940.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
   
 0.808
SFD35074.1
Putative DNA primase/helicase.
 
     0.781
SFD30855.1
Helix-turn-helix.
 
  
 0.723
SFD61945.1
Helix-turn-helix.
 
  
 0.653
SFD34997.1
Anti-repressor protein.
       0.573
SFD34979.1
Hypothetical protein.
       0.547
SFD35018.1
Hypothetical protein.
       0.547
SFD34070.1
Lichenan operon transcriptional antiterminator.
  
   
 0.521
SFD35033.1
Hypothetical protein.
       0.493
SFD31449.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
  
 0.458
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.