STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD35886.1PTS system, ascorbate-specific IIC component. (455 aa)    
Predicted Functional Partners:
SFD35897.1
PTS system IIB component, L-Asc family (TC 4.A.7); Manually curated.
 
 
 0.996
SFD36594.1
Transcriptional antiterminator.
 
 
 0.978
SFD35916.1
Transcriptional antiterminator.
 
     0.946
SFD34070.1
Lichenan operon transcriptional antiterminator.
 
 
 0.934
SFD44854.1
Phosphocarrier protein.
    
 0.914
SFD51793.1
Transcriptional antiterminator, BglG family.
  
 
 0.910
SFD58673.1
PTS system IIA component, L-Asc family.
 
 
 0.896
SFD35868.1
Transketolase; Belongs to the transketolase family.
 
  
 0.778
SFD58638.1
PTS system IIB component, L-Asc family.
  
 
 0.694
SFD58692.1
L-ascorbate 6-phosphate lactonase.
 
 
 0.637
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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