STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD48211.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
SFD48251.1
Sugar phosphate isomerase/epimerase.
 
     0.823
SFD48200.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.822
SFD48234.1
PTS system IIC component, Gat family (TC 4.A.5).
 
     0.783
SFD48182.1
Hypothetical protein.
 
     0.729
SFD48163.1
L-xylulokinase; Belongs to the FGGY kinase family.
 
     0.605
SFD37466.1
Predicted dehydrogenase.
    
 0.599
SFD42121.1
Acylphosphatase.
  
  
  0.588
SFD48262.1
Transcriptional regulator, LacI family.
 
     0.581
SFD54871.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.567
SFD38691.1
Threonine dehydrogenase.
  
 
  0.557
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.