STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD60474.1Homeodomain-like domain-containing protein. (169 aa)    
Predicted Functional Partners:
SFD60486.1
Phage uncharacterized protein (putative large terminase), C-terminal domain-containing protein.
 
    0.968
SFD60521.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
  
 0.939
SFD60507.1
Hypothetical protein.
 
     0.937
SFD60580.1
Hypothetical protein.
 
     0.835
SFD60682.1
Protein of unknown function.
 
     0.812
SFD60829.1
Uncharacterized phage protein gp47/JayE.
 
    0.793
SFD60640.1
Hypothetical protein.
 
     0.768
SFD60750.1
LysM repeat-containing protein.
 
     0.746
SFD60841.1
Hypothetical protein.
 
     0.743
SFD60738.1
Phage tail tape measure protein, TP901 family, core region.
 
     0.684
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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