STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD62120.1Fimbrial isopeptide formation D2 domain-containing protein. (700 aa)    
Predicted Functional Partners:
SFD45112.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
 
 0.835
SFD48487.1
Hypothetical protein.
  
 
 0.835
SFD31359.1
Protein of unknown function.
    
 
 0.833
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.829
dltC
D-alanine--poly(phosphoribitol) ligase subunit 2; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.
  
 
 0.829
SFD57165.1
RNA polymerase sporulation-specific sigma factor; Belongs to the sigma-70 factor family.
   
 0.751
SFD37728.1
Calcineurin-like phosphoesterase superfamily domain-containing protein.
   
   0.739
SFD55634.1
Chromosome partitioning protein.
  
 
 0.701
SFD63285.1
Chromosome partitioning protein.
  
 
 0.701
SFD37515.1
Hypothetical protein.
   
 0.694
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.