STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD63482.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
SFD63490.1
Predicted arabinose efflux permease, MFS family.
 
  
 0.755
citG
triphosphoribosyl-dephospho-CoA synthase.
       0.726
SFD53133.1
Two-component system, CitB family, sensor histidine kinase MalK.
  
  
 0.617
SFD53108.1
Two-component system, CitB family, response regulator MalR.
  
   
 0.523
SFD34070.1
Lichenan operon transcriptional antiterminator.
  
 
 
 0.485
SFD38556.1
AraC-type DNA-binding protein.
  
  
 0.452
SFD55255.1
CRISPR type II-A/NMEMI-associated protein Csn2.
  
     0.418
SFD37272.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
  
 0.417
SFD51793.1
Transcriptional antiterminator, BglG family.
  
 
 
 0.400
Your Current Organism:
Lactobacillus bombicola
NCBI taxonomy Id: 1505723
Other names: DSM 28793, L. bombicola, LMG 28288, LMG:28288, Lactobacillus bombicola Praet et al. 2015, Lactobacillus sp. R-53102, strain R-53102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.