STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCC77964.1Aspartate kinase. (216 aa)    
Predicted Functional Partners:
SCC77963.1
Aspartate kinase; Belongs to the aspartokinase family.
  
  0.996
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.971
SCC80035.1
Homoserine dehydrogenase.
 
 0.856
SCC80023.1
Aspartate/methionine/tyrosine aminotransferase.
  
  0.772
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
  
 0.727
SCC80422.1
Cystathione beta-lyase.
     
  0.659
SCC79171.1
Peptidylprolyl isomerase.
    
   0.658
SCC78700.1
Threonine synthase.
  
 
 0.657
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
 
 0.641
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.617
Your Current Organism:
Bifidobacterium commune
NCBI taxonomy Id: 1505727
Other names: B. commune, Bifidobacterium commune Praet et al. 2015, Bifidobacterium sp. R-52791, DSM 28792, LMG 28292, LMG:28292, strain R-52791
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.