STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_18597YTH domain-containing protein. (252 aa)    
Predicted Functional Partners:
B0A48_14477
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.845
B0A48_05634
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.845
B0A48_18376
CPSF_A domain-containing protein.
    
 0.830
B0A48_18120
CPSF_A domain-containing protein.
    
 0.830
B0A48_00779
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 
 0.748
B0A48_00568
Uncharacterized protein.
    
 
 0.748
B0A48_13886
Fip1 domain-containing protein.
   
 0.737
B0A48_04879
Fip1 domain-containing protein.
   
 0.737
B0A48_12714
Suf domain-containing protein.
    
 
 0.734
B0A48_06829
Suf domain-containing protein.
    
 
 0.734
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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