STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_17001Slu7 domain-containing protein. (472 aa)    
Predicted Functional Partners:
B0A48_05193
Uncharacterized protein.
   
 
 0.993
B0A48_09515
Pre-mRNA-splicing factor cwf14.
    
 
 0.991
B0A48_15976
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.989
B0A48_15857
Nuclear cap-binding protein subunit 2.
   
 0.988
B0A48_18067
Pre-mRNA-splicing factor cwc22.
   
 0.988
B0A48_17712
Uncharacterized protein.
   
 0.988
B0A48_09941
Uncharacterized protein.
   
 0.988
B0A48_02149
Pre-mRNA-splicing factor cwc22.
   
 0.988
B0A48_17622
Uncharacterized protein.
   
 0.986
B0A48_15754
Uncharacterized protein.
   
 0.986
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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