STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_16324FCP1 homology domain-containing protein. (621 aa)    
Predicted Functional Partners:
B0A48_01989
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
 
  
   0.890
B0A48_12822
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.880
B0A48_03924
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.880
B0A48_05187
Uncharacterized protein.
    
 0.849
B0A48_12325
LNS2 domain-containing protein.
    
 0.826
B0A48_03540
LNS2 domain-containing protein.
    
 0.826
B0A48_12028
Uncharacterized protein.
    
 0.769
B0A48_09119
Uncharacterized protein.
    
 0.769
B0A48_10853
Uncharacterized protein.
    
 0.753
B0A48_08859
Uncharacterized protein.
    
 0.753
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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